.. _sphx_glr_auto_examples_plotting:

Plotting examples
-----------------

This is a gallery containing some plotting examples.





.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows you how to generate riverplots to compare categorical columns, for example t...">

.. only:: html

  .. image:: /auto_examples/plotting/images/thumb/sphx_glr_plot_riverplot_thumb.png
    :alt: Comparing categorical variable

  :ref:`sphx_glr_auto_examples_plotting_plot_riverplot.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing categorical variable</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows you some of the different plots you can use to plot gene expression.">

.. only:: html

  .. image:: /auto_examples/plotting/images/thumb/sphx_glr_plot_split_gene_expression_thumb.png
    :alt: plotting gene expression

  :ref:`sphx_glr_auto_examples_plotting_plot_split_gene_expression.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">plotting gene expression</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows you the inbuilt quality control plots from besca.">

.. only:: html

  .. image:: /auto_examples/plotting/images/thumb/sphx_glr_plot_qc_thumb.png
    :alt: quality control plots

  :ref:`sphx_glr_auto_examples_plotting_plot_qc.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">quality control plots</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to generate celltype quantification plots. These types of plots  ...">

.. only:: html

  .. image:: /auto_examples/plotting/images/thumb/sphx_glr_plot_celltype_quantification_thumb.png
    :alt: Visualize cell fractions

  :ref:`sphx_glr_auto_examples_plotting_plot_celltype_quantification.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Visualize cell fractions</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows you how to generate plots to visualize the chosen filter threshold. This way...">

.. only:: html

  .. image:: /auto_examples/plotting/images/thumb/sphx_glr_plot_filtering_thumb.png
    :alt: filtering functions

  :ref:`sphx_glr_auto_examples_plotting_plot_filtering.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">filtering functions</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/plotting/plot_riverplot
   /auto_examples/plotting/plot_split_gene_expression
   /auto_examples/plotting/plot_qc
   /auto_examples/plotting/plot_celltype_quantification
   /auto_examples/plotting/plot_filtering