.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/plotting/plot_riverplot.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        Click :ref:`here <sphx_glr_download_auto_examples_plotting_plot_riverplot.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_plotting_plot_riverplot.py:


Comparing categorical variable
==============================

This example shows you how to generate riverplots to compare categorical columns,
for example to compare multiple annotations
This way you can easily check (visually) discripancies.

.. GENERATED FROM PYTHON SOURCE LINES 10-19

.. code-block:: default



    import besca as bc
    import pytest

    # pytest.skip('Test is only for here as example and should not be executed')
    # import data
    adata = bc.datasets.Baron2016_processed()








.. GENERATED FROM PYTHON SOURCE LINES 20-22

compare two categories: annotations made by different annotators
----------------------------------------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 22-25

.. code-block:: default



    bc.pl.riverplot_2categories(adata, ["assigned_cluster", "celltype2"])





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.. _sphx_glr_download_auto_examples_plotting_plot_riverplot.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example


    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_riverplot.py <plot_riverplot.py>`

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