.. _sphx_glr_auto_examples_preprocessing:

Preprocessing
-------------

This section highlights some of the features of the preprocessing functions included within BESCA.


.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates the entire process of filtering out cells/genes ob subpar quality bef...">

.. only:: html

  .. image:: /auto_examples/preprocessing/images/thumb/sphx_glr_plot_example_filtering_thumb.png
    :alt: performing filtering using besca

  :ref:`sphx_glr_auto_examples_preprocessing_plot_example_filtering.py`

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      <div class="sphx-glr-thumbnail-title">performing filtering using besca</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to perform highly variable gene selection, PCA, nearest neighbor ...">

.. only:: html

  .. image:: /auto_examples/preprocessing/images/thumb/sphx_glr_plot_pca_neighbors_clustering_thumb.png
    :alt: cluster generation

  :ref:`sphx_glr_auto_examples_preprocessing_plot_pca_neighbors_clustering.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">cluster generation</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/preprocessing/plot_example_filtering
   /auto_examples/preprocessing/plot_pca_neighbors_clustering