Usage

How to use with Singularity

In order to re-use the Docker image and run it, for example on the HPC with Singularity, first, create a personal access token with "read_registry" rights in the repo and then export this token in the terminal where the Singularity container should be run by the following

export SINGULARITY_DOCKER_USERNAME=<username>
export SINGULARITY_DOCKER_PASSWORD=<read_registry token>

singularity run docker://ghcr.io/bedapub/ngs-tools:main make_cls -h

See also Singularity documentation