besca.get_raw¶

besca.get_raw(adata)[source]¶

Extract the AnnData object saved in adata.raw

Returns the AnnData object saved in adata.raw as a normal AnnData object with which you can continue working. This includes all of the additional annotation.

Parameters:: adata (AnnData) – complete AnnData object
Returns:: returns the AnnData object contained in .raw with all relevant annotation
Return type:: AnnData

Examples

>>> import besca as bc
>>> adata = bc.datasets.simulated_pbmc3k_processed()
>>> adata_raw = bc.get_raw(adata)