export_celltype

besca.st.export_celltype(adata, basepath)[source]

Export celltype annotation to cell mapping in FAIR format for loading into database

wrapper function for labeling and labeling_info with correct folder structure/names for loading into the database.

Parameters:

  • adata (ÀnnData) – AnnData object that is to be exported

  • basepath (str) – root path to the Analysis folder (i.e. ../analyzed/<ANALYSIS_NAME>)

Returns:

writes to file

Return type:

None