This package contains an ElasticNet model which can use RNA-Seq data to predict immune phenotypes of the samples.
Warning: RNA-Seq expression values can be strongly affected by both the experimental protocol and the data processing. Before running the prediction make sure that your data is comparable to data used in the training dataset. A simple way to check is to compare your data to load_simulated_counts().
Installation
You can install the development version of cd8ippred like so:
remotes::install_github("bedapub/cd8ippred")Usage example
See here.