Function reference
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cd8ip_features_distribution - A data.frame with feature distribution simulated from kernel-density estimates based on the training data.
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compute_vst() - Apply
DESeq2::vst()transformation to the data.
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ecdf_pvals() - Given a matrix of observations, computes p-values for out of range features.
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get_n_out_of_range() - Given a matrix of observations, computes how many features are out of range.
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load_simulated_counts() - Simulated RNA-Seq counts, an Biobase::ExpressionSet object.
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predict_cd8ip() - Predict a CD8 immune phenotype using RNA-Seq data.
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two_sided_p() - Computes a two-sided p-value from a one-sided p-value.