max_genes

besca.pl.max_genes(adata, max_genes=5000, ax=None, figsize=None)[source]

visualize maximum number of genes per cell threshold.

this function generates a knee-plot visualizing a given min_cells cutoff when given an adata object

Parameters:

  • adata (AnnData) – The annotated data matrix.

  • max_genes (int | default = 5000) – visualize the chosen maximum gene number cutoff

  • ax (axes | default = None) – pass the axes class to which your figure should be added

  • figsize ((width, height) or None | default = None) – optional parameter to define the figure size of the plot that is to be generated

Returns:

Figure is displayed

Return type:

None