update_qualitative_palette

besca.pl.update_qualitative_palette(adata, palette, group='leiden', checkColors=True)

Update adata object such that the umap will adhere to the palette provided.

Parameters:

• adata (AnnData) – the AnnData object

• palette (dict) – dict with keys as the values of the group observation. To avoid warning from matlib it is advised to have hex color values

• group (str) – string identifying the column name of adata.obs where colors will be set.

• checkColors (boolean) – check the colors inputed to transform them if needed into a hex values. tupple of RBG of 0-1 values cna be converted. returns

• ------- –

• object. (None; update the adata) –