add_anno

besca.tl.sig.add_anno(adata: AnnData, cnames: DataFrame, mycol, clusters='leiden')[source]

Adds annotation generated with make_anno to a AnnData object Takes as input the AnnData object to which annotation will be appended and the annotation pd Generates a pd.Series that can be added as a adata.obs column with annotation at a level

Parameters:

  • adata (AnnData) – AnnData object that is to be annotated

  • cnames (panda.DataFrame) – a list of cluster names generated with make_anno

  • mycol (string) – column to be added

  • clusters (string) – initial cluster used for annotation (column in adata.obs)

Returns:

the annotated cells

Return type:

pd.Series