intersect_genes

besca.tl.auto_annot.intersect_genes(adata_train, adata_pred)

removes all genes not in all datasets

removes all genes not contained in all datasets

Parameters:

• adata_train (AnnData) – training dataset anndata object

• adata_pred (AnnData) – testing dataset anndata object

Returns:

• AnnData – An anndata object containing training dataset with non-shared genes removed

• AnnData – An anndata object containing testing dataset with non-shared genes removed