remove_genes

besca.tl.auto_annot.remove_genes(adata_trains, adata_pred, genes_to_use)

removes all genes not in gene set

removes all genes from var that are not found in specified gene set list

Parameters:

• adata_trains (list) – list of training dataset adata objects

• adata_pred (AnnData) – testing dataset anndata object

• genes_to_use (list) – list of genes to be removed

Returns:

• list – A list of training dataset anndata objects

• AnnData – An anndata object containing testing dataset