scvi_merge

besca.tl.auto_annot.scvi_merge(adata_trains, adata_pred)

merges all datasets and stores learnt representation in obsm

Parameters:

• adata_trains (list) – List of training datasets

• adata_pred (AnnData) – AnnData object containing testing dataset

• adata_train (AnnData) – Merged training datasets with new representation stored in obsm

• adata_pred – Test dataset with new representation in obsm

• adata_concat (AnnData) – Both adata_train and adata_pred concatenated to one dataset with new representation stored in obsm